2003 APIII Live Archives

PowerPoint presentations for this year were recorded during the course of the APIII 2003 conference, October 8 through 10. They are listed below so they will be available to you for future reference. Audio problems on specific files are noted, where applicable.

For your convenience, we have consolidated audio, synchronized slides, PowerPoint and video presentations onto this site.

Boot Camp

BOOT CAMP SESSION
Introduction to Hardware and Software
Dr. Harrison Synchronized Slides

BOOT CAMP SESSION
Files, Data Formats and Markup
Dr. Harrison Synchronized Slides

BOOT CAMP SESSION
Networking and System Architecture
Dr. Sinard Synchronized Slides

BOOT CAMP SESSION
Database Systems
Dr. Sinard Synchronized Slides

BOOT CAMP SESSION
Digital Image Acquisition and Processing
Dr. Hardy Synchronized Slides 

BOOT CAMP SESSION
Digital Image Management and Utilization
Dr. Hardy Synchronized Slides 

 

Other Sessions

API WORKING GROUP SESSION
Digital Imaging Standards in Pathology
Dr. Beckwith / Dr. Balis Synchronized Slides

CAP FOCUS SESSION
Information Architecture for Oncology Research
Dr. Niland Synchronized Slides

CAP FOCUS SESSION
Biomedical Informatics for Proteomics
Dr. Boguski Synchronized Slides

API FOCUS SESSION / PANEL DISCUSSION
Lessons From UPMC Tissue Banking Informatics Initiatives: A Nuts and Bolts Approach
Dr. Dhir Synchronized Slides

 

Breakout Sessions

BREAKOUT SESSION
Information Hubs for Molecular Biology and Genetics
Dr. Chattopadhyay Synchronized Slides

BREAKOUT SESSION
Informatics for Proteomics
Dr. Whitely / Dr. Lyons-Weiler Synchronized Slides

BREAKOUT SESSION
Banking Molecular Data to Develop Cancer Biomarkers: Changing the Research Culture
Dr. Rubin Synchronized Slides

BREAKOUT SESSION
The Future of Telepathology
Dr. Demetris / Dr. Williams Synchronized Slides

BREAKOUT SESSION
Telepathology: Barriers to a Bright Future
Dr. Williams Synchronized Slides

BREAKOUT SESSION
Cancer Registries: Integrating a Standardized Oncology Information Resource into the Informatics Spectrum
Ms. Winters / Ms. Urda / Ms. Gianella / Ms. Hetrick Synchronized Slides (Audio faint)

BREAKOUT SESSION
HIPAA Hoops and Hurdles: HIPAA Planning for an Academic Health Center:How to Meet New Friends and Try Not to Lose Old Ones
Dr. Miller / Dr. Connelly Synchronized Slides  (Audio faint) Synchronized Slides   (Audio faint)

BREAKOUT SESSION
Online Resources for Cancer Patients: A Review of the Field with Guidelines for Developers
Dr. Monaco Synchronized Slides / Dr. Ferguson

BREAKOUT SESSION
Pennsylvania Cancer Alliance for Bioinformatics Consortium: A Novel Approach to Cancer Research and Care
Dr. Liebman / Dr. Beck Synchronized Slides 
(Audio faint)

BREAKOUT SESSION
The Evolution of Pathology Informatics Programs in Hospitals and Medical Schools: Past, Present and Future
Dr. Friedman Synchronized Slides / Dr. Becich Synchronized Slides 

BREAKOUT SESSION
PERL & PYTHON PROGRAMMING WORKSHOP: Writing Simple Perl Scripts to Create, Convert and Analyze XML Documents
Dr. Berman and Dr. Harrison Synchronized Slides (Audio faint)

 

 

Scientific Sessions: Telepathology, Digital Microscopy and Image Analysis

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
A Virtual Slide Program Used for Computer-Based Proficiency Testing
Mr. Kujawski (Gagnon) Synchronized Slides

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
Integrated Framework for Digital Pathology Image Analysis: Distributed Sharing and Analysis of Digitized Microscopy Slides
Mr. Pan (Dr. Cowden) Synchronized Slides 

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
A 5-Dimensional, Mean-Shift Approach for Improved Segmentation of Pathology Images
Mr. He Slides (No audio)

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
Improved Software for Quantitative Analysis of Fluorescence Microscopy Images
Dr. Meeker Synchronized Slides

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
Multi-Spectral Imaging Applications in Pathology
Ms. Yagi Synchronized Slides (Audio distortion)

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
Standardization of Stain Condition
Mr. Abe Synchronized Slides (Audio distortion)

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
Linear Transformation of Spectral Transmittance in Application to Digital Staining of Unstained Tissue Sample Image
Dr. Yamaguchi Synchronized Slides (Audio distortion)

SCIENTIFIC SESSION: TELEPATHOLOGY, DIGITAL MICROSCOPY AND IMAGE ANALYSIS
Comparison of Stain Quantification for Histological Specimens Using Spectrometer and Multi-Band Image Data
Mr. Abdul-Karim Synchronized Slides (Audio distortion)

 

Scientific Sessions: Bioinformatics and Data Mining

SCIENTIFIC SESSION:SCIENTIFIC SESSION: BIOINFORMATICS AND DATA MINING
Linguistic Approach to Identification of Motifs and Pharmaceutical Classification of GPCRs
Ms. Cheng Synchronized Slides (Audio faint)

SCIENTIFIC SESSION: BIOINFORMATICS AND DATA MINING
Comparative Analysis of Statistical Learning Techniques for Classification of Proteomic Profiles
Dr. Hauskrecht Synchronized Slides (Audio faint)

SCIENTIFIC SESSION:SCIENTIFIC SESSION: BIOINFORMATICS AND DATA MINING
A Bioinformatics Tool for Verification of Gene-Gene Interactions
Mr. Jitender Synchronized Slides

SCIENTIFIC SESSION: BIOINFORMATICS AND DATA MINING
Web-Based Implementation of a Modular, General Purpose Temporal Abstraction Framework for Pattern Identification in Clinical Laboratory Data
Dr. Post Synchronized Slides

 

Scientific Sessions: Pathology Informatics Applications

SCIENTIFIC SESSION: PATHOLOGY INFORMATICS APPLICATIONS
Coagulation Service Web Site and Palm Application Provide Point of Care Access to Decision Support Information
Dr. Anderson Synchronized Slides

SCIENTIFIC SESSION: PATHOLOGY INFORMATICS APPLICATIONS
A Lightweight XML, Editor for Clinical Laboratory Procedure Manuals
Dr. Saadawi Synchronized Slides

SCIENTIFIC SESSION: PATHOLOGY INFORMATICS APPLICATIONS
Macro-Driven Report Entry - Next Step in Report Generation
Dr. Jukic Synchronized Slides

SCIENTIFIC SESSION: PATHOLOGY INFORMATICS APPLICATIONS 
CAP Cancer Templates in Practice: A User-Friendly Software System for Cancer Report Entry, Transmission and Automated SNOMED Encoding
Dr. Routbort Synchronized Slides (Audio/video distortion first 4 slides only))

 


Scientific Sessions: Oncology and Health Informatics

SCIENTIFIC SESSION: ONCOLOGY AND HEALTH INFORMATICS
Organizational Simulation of a Clinical Trial Error Identifies Error-prone Processes
Dr. Fridsma Synchronized Slides

SCIENTIFIC SESSION: ONCOLOGY AND HEALTH INFORMATICS
Essential Elements for Semi-Automating Biological and Clinical Reasoning in Oncology
Dr. Day Slides (no audio)

SCIENTIFIC SESSION: ONCOLOGY AND HEALTH INFORMATICS
The Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC): A Common Web-Based Data Entry and Query Tool for a State-Wide Virtual Biorepository
Mr. A. Patel Synchronized Slides

SCIENTIFIC SESSION: ONCOLOGY AND HEALTH INFORMATICS
Optimal Immunohistochemistry Resulting Requires Special Data and Functionality Models
Dr. Schmidt Synchronized Slides

SCIENTIFIC SESSION: ONCOLOGY AND HEALTH INFORMATICS
How Do Low-Literacy Adults Access Internet Health Information?
Ms. Birru Synchronized Slides

SCIENTIFIC SESSION: ONCOLOGY AND HEALTH INFORMATICS
Generation of Isolation Notifications for Patients with Positive Cultures of Epidemiological Significance
Dr. Blank Synchronized Slides

 

Scientific Sessions: Controlled Vocabulary, Decision Support and Outcomes Research

SCIENTIFIC SESSION: CONTROLLED VOCABULARY, DECISION SUPPORT AND OUTCOMES RESEARCH
GnegEx - Implementation and Evaluation of a Negation Tagger for the Shared Pathology Informatics Network
Mr. Mitchell Synchronized Slides

SCIENTIFIC SESSION: CONTROLLED VOCABULARY, DECISION SUPPORT AND OUTCOMES RESEARCH Extracting Genetic conditions that Predispose to Cancer, Using the Online Mendelain Inheritance in Man
Dr. Berman Synchronized Slides

SCIENTIFIC SESSION: CONTROLLED VOCABULARY, DECISION SUPPORT AND OUTCOMES RESEARCH
Automated Deidentification of Pathology Reports
Dr. Beckwith Synchronized Slides 

SCIENTIFIC SESSION: CONTROLLED VOCABULARY, DECISION SUPPORT AND OUTCOMES RESEARCH
Zero-Check, A Zero-Knowledge Protocol for Reconciling Patient Identities Across Institutions
Dr. Berman Synchronized Slides  

SCIENTIFIC SESSION: CONTROLLED VOCABULARY, DECISION SUPPORT AND OUTCOMES RESEARCH
Predicting Tumor Marker Outcomes with Monte Carlo Stimulations
Dr. Berman Synchronized Slides

SCIENTIFIC SESSION: CONTROLLED VOCABULARY, DECISION SUPPORT AND OUTCOMES RESEARCH
Diagnosis of CTCL Patients with High or Low Tumor Burdens by Discriminant Analysis of zPCR Data
Dr. Kari Synchronized Slides




Scientific Sessions: Microarray and Tissue Array Analysis

SCIENTIFIC SESSION: MICROARRAY AND TISSUE ARRAY ANALYSIS
A Web-based Relational Database for Complete Tissue Microarray Data Administration
Dr. Seligson Synchronized Slides 

SCIENTIFIC SESSION: MICROARRAY AND TISSUE ARRAY ANALYSIS
TMAJ: Open Source Software to Manage a Tissue Microarray Database
Mr. DeMarzo Synchronized Slides 

SCIENTIFIC SESSION: MICROARRAY AND TISSUE ARRAY ANALYSIS
Flexible Framework for Microarray Applications
Dr. Tuck Synchronized Slides

SCIENTIFIC SESSION: MICROARRAY AND TISSUE ARRAY ANALYSIS
A Gene Expression Data Analysis Suite
Mr. S. Patel Synchronized Slides

SCIENTIFIC SESSION: MICROARRAY AND TISSUE ARRAY ANALYSIS
Novel Approaches for Sensitive Detection of Gene Expression Changes Using Oligonucleotide Microarrays
Dr. Master Synchronized Slides

SCIENTIFIC SESSION: MICROARRAY AND TISSUE ARRAY ANALYSIS
Unsupervised Color Analysis of Histologically Stained Tissue Microarrays
Mr. Rabinovich Synchronized Slides

 

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